KONG Weiming, LYU Wenwen, JIANG Jiayuan, FENG Tienan, YU Zhangsheng. Construction and Management of Biobank Information System for Multi-center Colorectal Cancer Clinical Research[J]. Medical Journal of Peking Union Medical College Hospital, 2022, 13(4): 664-669. DOI: 10.12290/xhyxzz.2021-0763
Citation: KONG Weiming, LYU Wenwen, JIANG Jiayuan, FENG Tienan, YU Zhangsheng. Construction and Management of Biobank Information System for Multi-center Colorectal Cancer Clinical Research[J]. Medical Journal of Peking Union Medical College Hospital, 2022, 13(4): 664-669. DOI: 10.12290/xhyxzz.2021-0763

Construction and Management of Biobank Information System for Multi-center Colorectal Cancer Clinical Research

Funds: 

National Natural Science Foundation of China 12171318

Natural Science Foundation of Shanghai 20JC1410100

Natural Science Foundation of Shanghai 21ZR1436300

Shanghai Three-year Action Plan for Public Health System Construction GWV-10.1-XK05

Sino-Shanghai-SJTU Trans-med Awards Research 20190102

More Information
  • Corresponding author:

    YU Zhangsheng, E-mail: yuzhangsheng@sjtu.edu.cn

  • Received Date: November 29, 2021
  • Accepted Date: December 28, 2021
  • Available Online: June 22, 2022
  • Issue Publish Date: July 29, 2022
  • In recent years, the incidence of colorectal cancer in China has increased significantly. With the in-depth exploration of the mechanisms of colorectal cancer recurrence and metastasis, a biobank information system that can provide comprehensive biological information is becoming more and more important. This paper expounds on the construction of a multi-center colorectal cancer clinical research biobank information system that includes three subsystems as follows: a clinical electronic data acquisition system, a biological sample management system, and a biological information data platform using the micro-service architecture. This paper explains how these subsystems are used in the multi-center management module and their characteristic functions in clinical research. Data quality and interconnection are supported through standardized data management solutions such as unified coding rules, structured clinical information, standardized sample circulation information, and standardized data storage. Thereby, this system provides comprehensive biomedical information for the promotion of translational medicine research and the development of precision medicine.
  • [1]
    Sun D, Li H, Cao M, et al. Cancer burden in China: trends, risk factors and prevention[J]. Cancer Biol Med, 2020, 17: 879-895. DOI: 10.20892/j.issn.2095-3941.2020.0387
    [2]
    吴春晓, 顾凯, 庞怡, 等. 2016年上海市恶性肿瘤发病和死亡情况与2002—2016年的变化趋势分析[J]. 中国癌症杂志, 2021, 31: 879-891. https://www.cnki.com.cn/Article/CJFDTOTAL-ZGAZ202110002.htm

    Wu CX, Gu K, Pang Y, et al. Analysis of the current status of cancer incidence and mortality in Shanghai, 2016 and trends of 2002—2016[J]. Zhongguo Aizheng Zazhi, 2021, 31: 879-891. https://www.cnki.com.cn/Article/CJFDTOTAL-ZGAZ202110002.htm
    [3]
    Jung G, Hernández-Illán E, Moreira L, et al. Epigenetics of colorectal cancer: biomarker and therapeutic potential[J]. Nat Rev Gastroenterol Hepatol, 2020, 17: 111-130. DOI: 10.1038/s41575-019-0230-y
    [4]
    Xie YH, Chen YX, Fang JY. Comprehensive review of targeted therapy for colorectal cancer[J]. Signal Transduct Target Ther, 2020, 5: 1-30. DOI: 10.1038/s41392-019-0089-y
    [5]
    刘世建, 傅启华, 王伟, 等. 临床生物样本库发展的机遇与挑战[J]. 第二军医大学学报, 2017, 38: 265-269. https://www.cnki.com.cn/Article/CJFDTOTAL-DEJD201703001.htm

    Liu SJ, Fu QH, Wang W, et al. Opportunity and challenge of clinical biobank in China[J]. Di-er Junyi Daxue Xuebao, 2017, 38: 265-269. https://www.cnki.com.cn/Article/CJFDTOTAL-DEJD201703001.htm
    [6]
    Simeon-Dubach D, Watson P. Biobanking 3.0: evidence based and customer focused biobanking[J]. Clin Biochem, 2014, 47: 300-308. DOI: 10.1016/j.clinbiochem.2013.12.018
    [7]
    Quinlan PR, Gardner S, Groves M, et al. A Data-Centric Strategy for Modern Biobanking[J]. Adv Exp Med Biol, 2015, 864: 165-169.
    [8]
    郭丹, 杨文航, 徐英春. 临床生物样本库信息系统建设与发展[J]. 协和医学杂志, 2018, 9: 81-86. DOI: 10.3969/j.issn.1674-9081.2018.01.015

    Guo D, Yang WH, Xu YC. Construction and Development of the Information System of Clinical Biobank[J]. Xiehe Yixue Zazhi, 2018, 9: 81-86. DOI: 10.3969/j.issn.1674-9081.2018.01.015
    [9]
    郜恒骏, 杜莉利, 张小燕, 等. 生物样本库发展的现状、机遇与挑战[J]. 协和医学杂志, 2018, 9: 172-176. DOI: 10.3969/j.issn.1674-9081.2018.02.013

    Gao HJ, Du LL, Zhang XY, et al. Status, Opportunities and Challenges of Biobanks[J]. Xiehe Yixue Zazhi, 2018, 9: 172-176. DOI: 10.3969/j.issn.1674-9081.2018.02.013
    [10]
    中华人民共和国中央人民政府. 《中华人民共和国国民经济和社会发展第十四个五年规划和2035年远景目标纲要》[EB/OL ]. (2021-03-13)[2021-11-30]. http://www.gov.cn/xinwen/2021-03/13/content_5592681.htm.
    [11]
    Müller H, Dagher G, Loibner M, et al. Biobanks for life sciences and personalized medicine: importance of standardization, biosafety, biosecurity, and data management[J]. Curr Opin Biotechnol, 2020, 65: 45-51. DOI: 10.1016/j.copbio.2019.12.004
    [12]
    Glicksberg BS, Johnson KW, Dudley JT. The next genera-tion of precision medicine: observational studies, electronic health records, biobanks and continuous monitoring[J]. Hum Mol Genet, 2018, 27: R56-R62. DOI: 10.1093/hmg/ddy114
    [13]
    Williams CL, Sica JC, Killen RT, et al. The growing need for microservices in bioinformatics[J]. J Pathol Inform, 2016, 7: 45. DOI: 10.4103/2153-3539.194835
    [14]
    国家食品药品监督管理总局. 总局关于发布临床试验的电子数据采集技术指导原则的通告[EB/OL ]. (2016-07-29)[2021-11-30]. https://www.nmpa.gov.cn/directory/web/nmpa/xxgk/ggtg/qtggtg/20160729184001958.html.
    [15]
    Harris PA, Taylor R, Minor BL, et al. The REDCap consortium: Building an international community of software platform partners[J]. J Biomed Inform, 2019, 95: 103208. DOI: 10.1016/j.jbi.2019.103208
    [16]
    Uzun V, Bilgin S. Using QR Code Technology to Reduce Self-Administered Medication Errors[J]. J Pharm Pract, 2021, 34: 587-591. DOI: 10.1177/0897190019885245
    [17]
    O'Driscoll A, Daugelaite J, Sleator RD. 'Big data', Hadoop and cloud computing in genomics[J]. J Biomed Inform, 2013, 46: 774-781. DOI: 10.1016/j.jbi.2013.07.001
    [18]
    Leipzig J. A review of bioinformatic pipeline frameworks[J]. Brief Bioinform, 2017, 18: 530-536.
    [19]
    Chappell K, Francou B, Habib C, et al. Galaxy Is a Suitable Bioinformatics Platform for the Molecular Diagnosis of Human Genetic Disorders Using High-Throughput Sequenc-ing Data Analysis. Five Years of Experience in a Clinical Laboratory[J]. Clin Chem, 2022, 68: 313-321. DOI: 10.1093/clinchem/hvab220
  • Related Articles

    [1]ZHANG Lu, LI Jian. Castleman Disease in China: State-of-the-art Technology Before the Era of IL-6 Targeted Therapy[J]. Medical Journal of Peking Union Medical College Hospital, 2023, 14(5): 911-914. DOI: 10.12290/xhyxzz.2023-0227
    [2]LIU Yuan, ZHAO Lin. Update and Interpretation of 2022 National Comprehensive Cancer Network Clinical Practice Guidelines for Gastric Cancer[J]. Medical Journal of Peking Union Medical College Hospital, 2022, 13(6): 999-1004. DOI: 10.12290/xhyxzz.2022-0271
    [3]WANG Ying, ZHANG Qing, WEI Yao, WANG Yahong, ZHANG Li, QI Zhenhong, CAI Sheng, LI Jianchu, ZHAO Congpu. Development and Application of Integrated Intelligent Scheduling Software System[J]. Medical Journal of Peking Union Medical College Hospital, 2021, 12(6): 1030-1033. DOI: 10.12290/xhyxzz.2021-0076
    [4]Ke ZENG, Yu WANG, Wei-guo ZHU. Information Technology-related Medical Adverse Events[J]. Medical Journal of Peking Union Medical College Hospital, 2020, 11(2): 196-201. DOI: 10.3969/j.issn.1674-9081.20190083
    [5]Yuan XIA, Xiang-pei LI. The Role of MicroRNA Regulation of Interferon-α in the Pathogenesis of Systemic Lupus Erythematosus[J]. Medical Journal of Peking Union Medical College Hospital, 2019, 10(6): 673-678. DOI: 10.3969/j.issn.1674-9081.2019.06.021
    [6]Qiu-hong MAN, Wei-ye WANG. Applying "Refactoring" Strategies to Promote the Interoperability Across Clinical Biobanks and Utilization of the Research Resources[J]. Medical Journal of Peking Union Medical College Hospital, 2019, 10(4): 409-413. DOI: 10.3969/j.issn.1674-9081.2019.04.019
    [7]Qiu-hong MAN, Jiang-li XUE, Ya-jun YANG. Standardized Design of Biobank's Informed Consent Form[J]. Medical Journal of Peking Union Medical College Hospital, 2019, 10(1): 77-80. DOI: 10.3969/j.issn.1674-9081.2019.01.012
    [8]Dan GUO, Wen-hang YANG, Ying-chun XU. Construction and Development of the Information System of Clinical Biobank[J]. Medical Journal of Peking Union Medical College Hospital, 2018, 9(1): 81-86. DOI: 10.3969/j.issn.1674-9081.2018.01.015
    [9]Yu-mei JIN, Feng-rong AI, Yan LUO, Ying LI. Comparison of Central Corneal Thickness Before and After Mydriasis Measured with A-ultrasound Pachymetry and Pentacam Scheimpflug System[J]. Medical Journal of Peking Union Medical College Hospital, 2013, 4(4): 429-432. DOI: 10.3969/j.issn.1674-9081.2013.04.017
    [10]Ji-hai LIU, Lian-jun ZHAO, Wan-peng LIAO, Xue-zhong YU, Shu-bin GUO, Teng-da XU, Wen-hua ZHOU, Hua-dong ZHU. Design and Implementation of Emergency Information System Based on Cognitive Task Analysis[J]. Medical Journal of Peking Union Medical College Hospital, 2013, 4(3): 224-232. DOI: 10.3969/j.issn.1674-9081.2013.03.002
  • Cited by

    Periodical cited type(1)

    1. 王医成,贺康,唐博,胡斌,谭志荣. 基于微服务架构的生物样本库信息管理系统的建设与应用. 中国医疗设备. 2023(11): 105-110 .

    Other cited types(0)

Catalog

    Article Metrics

    Article views (706) PDF downloads (67) Cited by(1)
    Related

    /

    DownLoad:  Full-Size Img  PowerPoint
    Return
    Return
    x Close Forever Close